ELLPACA nu Merged 001 - Report

pre_dir = "/home/dlejeune/Documents/real_data/ellpaca_nu_merged"
post_dir = "/home/dlejeune/results/ellpaca_nu_merged_001/reverse_translate"
report_dir = "/home/dlejeune/results/ellpaca_nu_merged_001/functional_filter"
git_commit_id = "abcdef"
nextflow_params = {"a": "something"}

Overview

This pipeline run contained 218 files. In total, we lost 36712 sequences, or 27.51% of the input.

Pipeline Point	Number of sequences
pre	133462
post	96750

Sequence Loss Overview

There is meant to be an upset plot here

MSA Quality Check

An overview of the resulting nucleotide multiple sequence alignments are shown below. Gaps are shown in purple, while other nucleotides are shown in green, yellow, blue, light putple.

Sequence Length

The plot below shows the sequence length distribution for the samples that pass filter.

Sample File Sizes