pre_dir = "/home/dlejeune/Documents/real_data/ellpaca_nu_merged"
post_dir = "/home/dlejeune/results/ellpaca_nu_merged_001/reverse_translate"
report_dir = "/home/dlejeune/results/ellpaca_nu_merged_001/functional_filter"
git_commit_id = "abcdef"
nextflow_params = {"a": "something"}ELLPACA nu Merged 001 - Report
Overview
This pipeline run contained 218 files. In total, we lost 36712 sequences, or 27.51% of the input.
| Pipeline Point | Number of sequences |
|---|---|
| pre | 133462 |
| post | 96750 |
Sequence Loss Overview
There is meant to be an upset plot here
MSA Quality Check
An overview of the resulting nucleotide multiple sequence alignments are shown below. Gaps are shown in purple, while other nucleotides are shown in green, yellow, blue, light putple.

Sequence Length
The plot below shows the sequence length distribution for the samples that pass filter.
